"/>Research area

Marine Genomics

Genomes from the blue frontier — assembling and mining marine and microbial genomes for biodiversity and natural-product discovery.

0
genome, de novo
0
+ gene clusters
0
sequencing modes
Overview

What this area is.

Marine organisms encode an extraordinary, under-explored chemical and genetic diversity. We assemble de novo genomes of marine fungi and microbes and mine them for biosynthetic gene clusters behind novel natural products.

Comparative and phylogenomic analysis places these genomes in evolutionary context, while metagenomics profiles whole marine communities and their functional potential.

Tools & technologies

SPAdesFlyeantiSMASHBUSCOOrthoFinderIQ-TREEProkkaMetaPhlAn
Genome mapContigs, GC content and feature density.
Genome browserGene models across an assembled scaffold.
Capabilities

What we do.

Core methods we apply in marine genomics.

De novo assembly

Hybrid short/long-read assembly of novel marine genomes.

Secondary-metabolite mining

BGC detection for natural-product and drug discovery.

Comparative genomics

Orthology, synteny and gene-family evolution.

Phylogenomics

Placing organisms accurately on the tree of life.

Metagenomics

Community composition and function from environmental samples.

Functional annotation

Linking genes to pathways and chemistry.

Workflow

From data to insight.

How a marine genomics project flows end to end.

01

Sampling

marine isolates

02

Sequencing

Illumina + Nanopore

03

Assembly

hybrid de novo

04

Annotation

genes · BGCs

05

Compare

phylogenomics

06

Discover

novel metabolites

Visual analytics

Publication-grade figures.

Interactive, live-rendered visualisations used in marine genomics.

Genome mapContigs, GC content and feature density.
Genome browserGene models across an assembled scaffold.
Biosynthetic networkGene clusters linked to metabolite classes.
Expression contrastCondition-dependent gene activity.
Focus

Where we go deep.

Halophilic & marine fungi

Genomes such as marine-derived Aspergillus and their metabolite potential.

Natural-product discovery

From biosynthetic clusters to candidate compounds.

Biodiversity & evolution

Comparative insight across marine lineages.

Insights

Questions we answer.

A few of the things people ask about marine genomics — and our short answers. Ask CGB-AI for more.

Why marine genomes?

Marine and halophilic organisms occupy extreme niches and encode unusual biosynthetic chemistry — a rich source of new natural products.

What are BGCs?

Biosynthetic gene clusters are co-located genes that together produce a secondary metabolite — the genomic signature of natural-product potential.

Selected research

Publications in Marine Genomics.

Drawn from our full record of 173 papers, filtered to this area.

Browse all publications →

Start a marine genomics project.

Tell us the biological question and the data you have — we will map out an approach.

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